鱼类系统分类与适应性演化研究组
研究组组长： 杨连东 青年研究员
研究组成员：何舜平 研究员、方成池 特别研究助理、陆苏祥 特别研究助理、王成 特别研究助理、钱雨婷 特别研究助理、研究生7人。
研究组介绍：本研究组的前身为开展淡水鱼类分类学研究工作的“鱼类分类学科组”，先后有伍献文、陈宜瑜、曹文宣研究员入选中国科学院院士。经过几代人的努力，本研究组的研究工作在国内和国际都具有较高的知名度，先后出版了《中国鲤科鱼类志》、《中国动物志，鱼纲，鲤形目》、《长江鱼类》、《中国淡水鱼类原色图集》等重要的鱼类学著作。在长期的野外工作和数据收集基础上建立了鱼类组织库、鱼类标本信息数据库；构建了全长江鱼类及中国水产物种的DNA条形码数据库,为eDNA评估和监测鱼类多样性打下了坚实基础。目前主要从事鱼类系统发育、适应性演化、生物地理学、比较基因组学和生物信息学等方面的研究，通过多组学研究手段与分子生物学技术揭示极端环境下鱼类适应性演化背后的遗传机制。研究工作运用分子系统学方法发现鲤科鱼类系统发育新格局；运用生物地理学方法研究了鱼类物种分化与青藏高原隆升的关系；在国际上率先对青藏高原这一高原极端环境的鱼类进行转录组和基因组水平研究；首次揭示了7千米以下超深渊狮子鱼适应极端环境的遗传基础；对脊椎动物从水生到陆生转变进行了深入研究；联合国内外著名研究机构主导提出“万种鱼基因组计划（Fish 10K）”。相关成果发表在Cell、Nature、Nature Ecology & Evolution、National Science Review、Systematic Biology、Molecular Biology and Evolution、Molecular Ecology、 BMC Biology、Elife、Science China Life Sciences、Molecular Phylogenetics and Evolution等著名杂志。研究组先后承担欧盟项目、国家自然科学基金重点项目、国家863项目、973专题、中国科学院创新方向性和前沿项目、中国科学院先导项目、国家基金委重大研究计划、重大项目，累计发表论文282篇，多篇发表于进化生物学等领域权威学术刊物上。
科研条件：本研究组配置了完备的分子和细胞生物学仪器平台，配有完整独立的斑马鱼养殖设施及基因敲除系统，拥有独立的计算与数据存储等服务器，并依托中国科学院超算中心武汉分中心，可满足各类计算与实验需求。
代表论著：
1. Xupeng Bi#,Kun Wang#,Liandong Yang#,Hailin Pan#,Haifeng Jiang#,Qiwei Wei#,Miaoquan Fang,Hao Yu,Chenglong Zhu,Yiran Cai,Yuming He,Xiaoni Gan,Honghui Zeng,Daqi Yu,Youan Zhu,Huifeng Jiang,Qiang Qiu,Huanming Yang,Yong E. Zhang,Wen Wang*,Min Zhu*,Shunping He*,and Guojie Zhang*,Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes. Cell,2021,184 (5),1377-1391.
2. Kun Wang#, Jun Wang#, Chenglong Zhu#,Liandong Yang#, Yandong Ren#,Jue Ruan#, Guangyi Fan#, Jiang Hu#, Wenjie Xu, Xupeng Bi, Youan Zhu, Yue Song, Huatao Chen, Tiantian Ma, Ruoping Zhao,Haifeng Jiang,Bin Zhang, Chenguang Feng, Yuan Yuan, Xiaoni Gan, Yongxin Li, Honghui Zeng, Qun Liu, Yaolei Zhang, Feng Shao, Shijie Hao, He Zhang,Xun Xu, Xin Liu, Depeng Wang, Min Zhu, Guojie Zhang, Wenming Zhao*,Qiang Qiu*, Shunping He*, and Wen Wang*,African lungfish genome sheds light on the vertebrate water-to-land transition. Cell, 2021, 184 (5), 1362-1376.
3. Guorui Li#, Xiangping Chen#, Fanghao Zhou#, Yiming Liang,Youhua Xiao, Xunuo Cao, Zhen Zhang,Mingqi Zhang, Baosheng Wu, Shunyu Yin, Yi Xu, Hongbo Fan,Zheng Chen,Wei Song, Wenjing Yang, Binbin Pan, Jiaoyi Hou,Weifeng Zou,Shunping He, Xuxu Yang,Guoyong Mao,Zheng Jia, Haofei Zhou,Tiefeng Li*,Shaoxing Qu, Zhongbin Xu, Zhilong Huang, Yingwu Luo, Tao Xie, Jason Gu,Shiqiang Zhu, Wei Yang, Self-powered soft robot in the Mariana Trench. Nature, 2021,591, 66–71.
4. Kun Wang#, Yanjun Shen#, Yongzhi Yang#, Xiaoni Gan#, Guichun Liu,Kuang Hu, Yongxin Li, Zhaoming Gao, Li Zhu, Guoyong Yan, Lisheng He,Xiujuan Shan, Liandong Yang,Suxiang Lu,Honghui Zeng,Xiangyu Pan , Chang Liu, Yuan Yuan,Chenguang Feng, Wenjie Xu, Chenglong Zhu, Wuhan Xiao, Yang Dong, Wen Wang*, Qiang Qiu*, and Shunping He*,Morphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptation. Nature Ecology & Evolution, 2019, 3 (5): 823-833.
5. Ning Sun#,Liandong Yang#, Fei Tian#,Honghui Zeng#, Ziwen He*,Kai Zhao*, Cheng Wang, Minghui Meng, Chenguang Feng,Chengchi Fang, Wenqi Lv, Jing Bo, Yongtao Tang, Xiaoni Gan, Zuogang Peng, Yiyu Chen*, Shunping He*, Sympatric or micro-allopatric speciation in a glacial lake? Genomic islands support neither. National Science Review, 2022, 9(12): nwac291.
6. Chase Doran Brownstein*, Liandong Yang*, Matt Friedman, and Thomas J. Near*,Phylogenomics of the Ancient and Species-Depauperate Gars Tracks 150 Million Years of Continental Fragmentation in the Northern Hemisphere. Systematic Biology, 2023, 72(1):213-227.
7. Yuting Qian#,Minghui Meng#, Chaowei Zhou#, Haiping Liu*, Haifeng Jiang, Youwei Xu, Wenjun Chen Zufa Ding, Yang Liu,Xiong Gong, Cheng Wang, Yi Lei, Tai Wang, Ying Wang, Xiaoni Gan,Axel Meyer, Shunping He*, and Liandong Yang*,The role of introgression during the radiation of endemic fishes adapted to living at extreme altitudes in the Tibetan Plateau. Molecular Biology and Evolution, 2023, 40(6): msad129.
8. Haifeng Jiang#, Wenqi Lv#,Ying Wang*,Yuting Qian, Cheng Wang,Ning Sun, Chengchi Fang, David M. Irwin, Xiaoni Gan*, Shunping He, and Liandong Yang*, Multi-omics investigation of freeze tolerance in the Amur sleeper, an aquatic ectothermic vertebrate. Molecular Biology and Evolution, 2023, 40(3): msad040.
9. Baosheng Wu#, Chenguang Feng#, Chenglong Zhu#, Wenjie Xu#, Yuan Yuan,Mingliang Hu, Ke Yuan, Yongxin Li, Yandong Ren, Yang Zhou, Haifeng Jiang, Qiang Qiu, Wen Wang, Shunping He*, Kun Wang*,The Genomes of Two Billfishes Provide Insights into the Evolution of Endothermy in Teleosts. Molecular Biology and Evolution, 2021, 38(6): msab035.
10. Wenjie Xu#, Chenglong Zhu#, Xueli Gao#, Baosheng Wu#, Han Xu#, Mingliang Hu#, Honghui Zeng#, Xiaoni Gan, Chenguang Feng,Jiangmin Zheng,Jing Bo, Li-Sheng He,Qiang Qiu, Wen Wang,Shunping He*, Kun Wang*,Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebrates. Elife, 2023, 12: RP87198.
11. Ying Wang*, Liandong Yang*, Surviving under pressure, Elife, 2023,12:e90216.
12. Ying Wang#*, Xuejing Zhang#,Jing Wang#,Cheng Wang#,Fei Xiong#, Yuting Qian#, Minghui Meng, Min Zhou, Wenjun Chen, Zufa Ding, Dan Yu, Yang Liu, Yumei Chang, Shunping He*, Liandong Yang*,Genomic insights into the seawater adaptation in Cyprinidae. BMC Biology, 2024, 22(1):87.
13. Liandong Yang#, Ying Wang#,Ning Sun#, Juan Chen, and Shunping He*, Genomic and functional evidence reveals convergent evolution in fishes on the Tibetan Plateau. Molecular Ecology, 2021, 30:5752-5764.
14. Liandong Yang#, Ning Sun#, Honghui Zeng#,Ying Wang#, Wenjun Chen, Zufa Ding, Yang Liu,Jing Wang, Minghui Meng, Yanjun Shen, Jingliang Kang,Xiuhui Ma,Wenqi Lv, Juan Chen, Axel Meyer*, Baocheng Guo*, and Shunping He*,Enlarged fins of Tibetan catfish provide new evidence of adaptation to high plateau. SCIENCE CHINA Life Sciences, 2023, 66(7):1554-1568.
15. Liandong Yang, Haifeng Jiang,Ying Wang, Yi Lei, Juan Chen, Ning Sun,Wenqi Lv, Cheng Wang, Thomas J. Near*, and Shunping He*, Expansion of vomeronasal receptor genes (OlfC) in the evolution of fright reaction in Ostariophysan fishes. Communications Biology, 2019, 2:235.
