论文
论文标题: Assessing the intestinal bacterial community of farmed Nile tilapia (Oreochromis niloticus) by high-throughput absolute abundance quantification
作者: Wu, Zhenbing; Wang, Shuyi; Zhang, Qianqian; Hao, Jingwen; Lin, Yaoyao; Zhang, Jinyong; Li, Aihua
出版刊物: AQUACULTURE
出版日期: DEC 15
出版年份: 2020
卷/期:
DOI: 10.1016/j.aquaculture.2020.735688
论文摘要: Intestinal microbiota studies based on high-throughput sequencing have attracted increasing attention due to its vital impact on host health. However, the taxonomical profile in relative proportion does not reflect the quantity of the intestinal bacteria and the inter-sample differences among taxa. In this study, we applied a high-throughput absolute abundance quantification method that used an internal standard strain to simultaneously obtain both the relative and absolute abundances in the intestinal bacterial community of farmed Nile tilapia (Oreochromis niloticus). The results showed that the structure, relative and absolute abundances, and function of the intestinal indigenous microbiota didn't change significantly after adding a low concentration of internal standard strain, and a comprehensive quantitative intestinal bacterial ecology was obtained. We first found that the total absolute abundance of the intestinal indigenous bacteria in farmed Nile tilapia was 2.95 x 10(8) cells g(-1), and most genera concentrations were in the range of 10(3) to 10(5) cells g(-1). The intestinal bacterial community was dominated by Cetobacterium with a concentration of 10(8) cells g(-1), followed by Plesiomonas, Romboutsia, and Escherichia-Shigella with concentrations of over 10(7) cells g(-1). The potential intestinal pathogens Aeromonas and Streptococcus reached 10(5) cells g(-1) in the tilapia intestines, while the potential probiotics such as Lactobacillus and Enterococcus with a high concentration of over 10(6) cells g(-1) were detected. Furthermore, PICRUSt analysis revealed that functional genes involved in membrane transport, carbohydrate metabolism, and amino acid metabolism were enriched in the intestinal microbiota of tilapia. This study characterized the intestinal quantitative bacterial ecology of farmed Nile tilapia, providing foundational support for an in-depth understanding of the intestinal microbiota and its interaction mechanism with the host.
== 实验室与学会 ==
  • == 实验室与学会 ==
  • 水产品种创制与高效养殖全国重点实验室
  • 中国科学院藻类生物学重点实验室
  • 农业部淡水养殖病害防治重点实验室
  • 武汉白暨豚保护基金会
  • 湖北省海洋湖沼学会
  • 中国动物学会原生动物学分会
  • 中国动物学会斑马鱼分会
  • 湖北省暨武汉动物学会
  • 中国水产学会鱼病学专业委员会
  • 中国鱼类学会
== 平台建设 ==
  • == 平台建设 ==
  • “一带一路”海域赤潮数据库
  • 国家水生生物种质资源库
  • 国家斑马鱼资源中心
  • 中国科学院淡水藻种库
  • 中国科学院武汉生命科学大型仪器区域中心
  • 湿地生态系统观测研究野外站联盟
  • 中国科学院水生生物研究所分析测试中心
  • 中国科学院超级计算武汉分中心
  • 水生生物博物馆
== 相关网站推荐 ==
  • == 相关网站推荐 ==
  • 中国科学院
  • 农业农村部
  • 科学技术部
  • 生态环境部
  • 国家自然科学基金委员会
  • 中国科学院武汉分院
  • 湖北省科学技术厅
  • 湖北省生态环境厅
  • 湖北省农业农村厅